Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs9895735 chr17:72891896 T/C 1.22E-5 294 16.87 27.63 21.2 KM Plot
CESC rs9910846 chr17:72891801 C/G 1.85E-5 295 16.87 27.63 21.2 KM Plot
CRC rs10036833 chr5:54615556 G/A 6.91E-5 371 22.3 22.67 9.67 KM Plot
CRC rs10041319 chr5:40869641 A/G 3.84E-5 374 22.35 21.75 26.1 KM Plot
CRC rs10041591 chr5:54676058 A/G 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs10044065 chr5:54675841 G/A 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs10058274 chr5:40872127 C/T 3.84E-5 374 22.35 21.75 26.1 KM Plot
CRC rs10069797 chr5:54663081 G/A 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs10071980 chr5:54647600 A/G 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs10072949 chr5:54682049 C/T 5.17E-5 373 22.32 23.43 9.67 KM Plot
CRC rs10073706 chr5:54647817 T/A 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs10078338 chr5:54680932 A/G 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs10078550 chr5:54647444 G/A 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs10216113 chr7:57736314 A/G 1.68E-6 373 11.92 20.38 23.37 KM Plot
CRC rs10234283 chr7:57716259 A/G 1.96E-6 371 11.92 20.58 23.3 KM Plot